Tokyo trains can be crowded outside rush hours. You may have to stand for some or all of your journey.
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While you may be accustomed to chatting with your traveling companions while using public transportation, this is not the norm in Japan. Loud chatter or other disturbance is considered rude. You may notice that most Japanese train passengers stand or sit in silence. If you must converse, try to do so quietly.
Talking loudly on trains is considered bad mannered and ranks highly amongst the most annoying behaviors on trains in Japan. Don't talk on the phone. Only on long-distance trains on the decks between cars is talking on the phone acceptable. Set your phone to silent mode.
Tokyo by day and by nightGet Tokyo's busiest shrines and temples to yourself (well, almost) when you arrive early. Most open from 9 am when they are at their quietest. The same can be said for Shinjuku where most shops open from 10 or 11 am, so arrive early to be the first through the door.
Especially when visiting large cities such as Tokyo and Osaka, you will want to avoid traveling during rush hour. Throughout Japan, rush hour typically lasts from 7 AM to 9 AM each morning, and 5 PM to 7 PM each evening. These are the times when many residents and going and coming from secular employment.
Avoid the rush hourWelcome to Tokyo's rush hour, which runs approximately between 7.30am-9.30am and 5.30pm-7.30pm, although the mornings are definitely more of a squeeze. If you're not a fan of crowds or have large luggage, it may be worth outside the peak times.
There is a custom in Japan where most people do not eat food outside other than when in restaurants. However, when using the bullet train or the green car, you are permitted to eat food. Normal trains and people commuting using said trains do not permit the consumption of food whilst riding the train.
Tokyo is facing overpopulation as it attracts people from other areas of Japan and this is also causing a housing shortage in numerous parts of the city.
With approximately 3.5 million people passing through it on a daily basis, Shinjuku Station holds the Guinness World Record for being the world's busiest train station.