You can safely store most medications in the same organizer compartment with other drugs for short periods of time without them interacting. But check with your doctor or pharmacist to make sure. Also, make sure your pillbox is filled correctly.
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Include your prescription and over-the-counter medicines in your travel health kit and take enough to last your entire trip, plus extra in case of travel delays. Pack medications in a carry on in case your luggage is lost or delayed. Keep medicines in their original, labeled containers.