The JR Pass does not allow you to ride on subways or trams within cities. However, most big cities have a few JR lines that you can use to go around, like the Osaka Loop or Kanjo line and the Tokyo Yamanote line, for example.
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The JR Pass is valid on all Shinkansen services in all the Shinkansen lines, except for the Nozomi and Mizuho services on the Tokaido and Sanyo Shinkansen lines. You will not have access to the trains with the fewest stops on the Tokaido and Sanyo lines.
How to reach Osaka Castle. Osaka Castle can be reached from Osakajou-koen station, on the JR Osaka Loop line. You'll step right into the castle park from the station, from where it is about 10 minutes on foot to the castle itself. The JR Osaka Loop line is covered by the JR Pass and JR-West Passes.
With your Japan Rail PassThe Hikari and Kodama trains on the Tokaido Shinkansen lines are covered by the Japan Rail Pass, and they can take you from Tokyo to Osaka in about 3 to 4 hours.
With your Japan Rail PassThe Hikari and Kodama trains on this line are covered by the pass, and can take you from Shin-Osaka Station in Osaka to either Shinagawa Station or Tokyo Station in Tokyo in under 3 hours.
The PASS is valid on all Japan Railways (JR) Group Shinkansen “bullet trains” (except for the “NOZOMI” and “MIZUHO” trains), limited express trains, express trains, and local trains (Green Car passes are valid for Green Car travel) in addition to the BRT (Bus Rapid Transit system).
You can use Icoca/Pasmo/Suica for all trains, subways and buses in Osaka. You can also use Icoca/Pasmo/Suica at many shops, especially convenience stores. You can use Icoca/Pasmo/Suica in other parts of Japan as well. Buy Icoca cards from vending machines at JR stations in Osaka.
Yamatoji rapid trains run every hour between Osaka and Nara from JR Osaka Station. The one-way trip takes 45 minutes and is covered by the JR Pass (it costs 800 yen without one).
Exclusively for foreign tourists to Japan, the JR West Kansai Pass provides unlimited travel on local JR trains and West JR buses in the Kansai region around Osaka, Kyoto, Nara, Kobe, and more for one to four days.
With your Japan Rail PassThe quickest way to travel from Kyoto to Osaka is via the Shinkansen. At Kyoto Station, Japan Rail Pass holders can board the Hikari and Kodama trains on the Tokaido Shinkansen Line for free, and arrive to Shin-Osaka Station after only a 15-minute ride.
The JR pass is only worth it if you travel through different cities, if you are just travelling to Tokyo to Kyoto for example, I would just pay on the Suica. You can do the online calculator or just use google to calculate which trip is easier - paying individually on Suica or getting a JR Pass.
In only about 2 hours and 30 minutes, it can take you from Shin-Osaka Station in Osaka to Tokyo Station or Shinagawa Station in Tokyo. However, it is not covered by your JR Pass, and you must purchase a one-way ticket that costs 13,620 yen (unreserved seat) or 14,650 yen (reserved seat).