Yes.There are train routes that have underwater tunnels, which connects Brooklyn, Manhattan, Roosevelt Island, Queens and The Bronx. Sadly, they don't have glass, so you can't see that you are in fact, underwater.
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The Uptown Hudson Tubes are a pair of tunnels that carry PATH trains between Manhattan, New York City, to the east and Jersey City, New Jersey, to the west. The tubes originate at a junction of two PATH lines on the New Jersey shore and cross eastward under the Hudson River.
The Steinway Tunnel is a pair of tubes carrying the IRT Flushing Line (7 and <7>? trains) of the New York City Subway under the East River between 42nd Street in Manhattan and 51st Avenue in Long Island City, Queens, in New York City.
Large portions of the subway outside Manhattan are elevated, on embankments, or in open cuts, and a few stretches of track run at ground level. In total, 40% of track is above ground. Many lines and stations have both express and local services.
Ground was broken in March 1900 in Manhattan. The construction company chose shallow cut and cover as the excavation method to avoid having to tunnel deep under New York's infrastructure. Wooden planking and bridges covered the construction so that traffic could continue over the tunneling that would go on for years.
The Lincoln Tunnel is one of two automobile tunnels built under the Hudson River, the other being the Holland Tunnel between Jersey City, New Jersey and Lower Manhattan.
Nicholas Avenue and 191st Street in the Washington Heights section of Manhattan, it is served by the 1 train at all times. It is the deepest station in the New York City Subway system at about 173 feet (53 m) below street level.
Both tunnels were 5,650 feet (1,722 m) long at a maximum depth of 97 feet (30 m) below the river. The diameter of each tube was 15 feet and 3 inches (4.6 m).
The Brooklyn–Battery Tunnel, officially the Hugh L. Carey Tunnel and commonly referred to as the Battery Tunnel or Battery Park Tunnel, is a tolled tunnel in New York City that connects Red Hook in Brooklyn with the Battery in Manhattan.
Detroit-Windsor TunnelIt is the third oldest underwater vehicle tunnel in the United States or Canada. It stands behind only New York/New Jersey's Hudson River-crossing Holland Tunnel (completed in 1927) and the Posey Tube (completed in 1928), which connects Alameda and Oakland, California.
According to the recent findings of the MTA's Spring 2022 Bi-Annual Customer Satisfaction and Travel Survey, New Yorkers particularly dislike the D train, giving the line a satisfaction rate of barely 40%.
THE world's deepest metro system is the Pyongyang Metro in North Korea which is 110 meters deep. The tunnel was built as part of an underground military facility. THE world's deepest metro, underground station is the Arsenalna Station on the Kiev Metro in Ukraine, at 107 meters deep.