You can enjoy much of Japan's rich food culture for around 1,000 yen per meal. If you have at least 3,000 yen per day to spend on food, you will have enough to eat in terms of volume and taste.
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A meal at a mid-range restaurant typically costs between ¥1,000 and ¥3,000 ($7.50 to $22). Weekly groceries in the city can set you back approximately ¥15,000 to ¥25,000 ($110 to $185), depending on your shopping habits and dietary preferences.
A good rule of thumb is 10,000 yen per day of travel. This includes short-haul intercity travel, but not long-haul like Shinkansen. Transportation: Long haul: Expect to spend up to 15,000 yen per long-haul train such as Shinkansen between Tokyo-Kyoto/Osaka, Tokyo-Kanazawa and Kyoto/Osaka-Hakata.
Overall, a budget traveler can expect to spend around $50 to $100 per day in Japan, while a mid-range traveler can expect to spend around $150 to $250 per day. It's important to plan ahead and research activities and costs to create a budget that works for you.
That's certainly a comfortable budget as long as you aren't expecting to eat many fancy meals or do a lot of drinking or clubbing. You can probably save some money with strategic use of transit passes (see summaries on Japan Guide or elsewhere). You should look into the Grutto Pass.
In short, I think you will be absolutely fine since your flight and hotels are paid for already. $1000 should be sufficient, but you must be strict with yourself. $50 a day just about creeps overbudget. I think you should set yourself about $30 a day and maybe sometimes jump up to $50/60 if you wanna try something.
People who live in Okinawa, Japan have a wise strategy when it comes to maintaining a healthy weight. They call it “hara hachi bu”, which means to stop eating when you are 80% full. Studies show that cutting back on calories can lead to better heart health, longevity, and weight loss.
For our tours, we usually recommend $60 USD per person per day for spending money in Japan, and that'll cover meals, entertainment, and light souvenir shopping. If you're not on our tour, we recommend a little bit more per day to cover things like entrance fees.
The likelihood that credit cards are accepted decreases in small cities and towns, and thus it is advisable to keep cash at hand when visiting rural areas. Cash is often the only way to pay for small entrance fees at tourist sights, smaller restaurants and small shops. Many lockers also require coins.
Tipping in Japan is not expected, and attempts to leave a tip will almost certainly be turned down (a potentially awkward moment). In Japan, it's thought that by dining out or drinking at a bar, you are already paying the establishment for good service.