Lockers can be found throughout the station building. They come in a range of sizes at fees of 300, 500 and 700 yen. There is usually a change machine nearby, or sign pointing the way to one. These are easy to use and can change 1000 yen notes for appropriate coins.

Luggage storage at Kyoto Station in 2026 follows a standardized pricing model based on the size of the locker. Small lockers, suitable for bags and small backpacks, typically cost 300 to 400 yen per day. Medium lockers, which can fit a standard 22-inch carry-on suitcase, are priced between 500 and 600 yen. Large and Extra-Large lockers, designed for full-size checked suitcases or large trekking packs, cost 700 to 900 yen. These lockers generally operate on a "calendar day" basis, meaning if you leave items overnight, you will be charged for a second day when you retrieve them. Most modern lockers in Kyoto accept IC cards (like Suica or Pasmo) as payment, which also serves as your digital key. If the station lockers are full during peak tourist seasons, the Kyoto Station Baggage Room (located on the B1 level) offers manned storage for a flat fee of approximately 700 to 1,000 yen per piece, which can be more convenient for oversized or awkwardly shaped items.