No, there is no direct bus from Long Island to New York. However, there are services departing from Middle Country Rd/Smith Ln and arriving at Cadman Pz W/Clark St via Tanger Outlet. The journey, including transfers, takes approximately 3h 30m.
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The best way to get from Long Island to Manhattan is to train which takes 2h 10m and costs $5 - $25. Alternatively, you can bus, which costs $30 - $45 and takes 3h 50m.
Long Island City has two NYC Ferry stops, Hunters Point South & Gantry Plaza State Park, both just one stop away from Midtown Manhattan, averaging around a 5-minute ride.
Free Shuttle Bus***At all pick-ups other than East 34th Street, the shuttle operates on a 'Flag Down Service' only. You may hail the shuttle like you would a taxi at any of the listed shuttle stops. Please note that shuttle operations are subject to traffic delays.
Long Island is served by two year-round ferry lines that cross the Long Island Sound, connecting Port Jefferson to Bridgeport, Connecticut and Orient Point to New London, Connecticut.
How to get to Long Island from NYC. BY TRAIN: The Long Island Railroad (LIRR) has hourly service to and from New York City's Penn Station, it's the perfect opportunity for passengers to kick back and relax. Check the website for schedules at mta.info/lirr.