Japanese rely on railwaysRailways are the country's main method of passenger transport, allowing fast and frequent access within and between major cities and metropolitan areas.
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Each ticket costs JPY 3,200, and foreign passport holders can buy discounted tickets. If you bought a Japan Rail Pass in advance, it includes unlimited train rides on the Narita Express. If you're a little hungry, you can purchase food and drinks to enjoy en route as you relax and look forward to your stay in Japan.
Yes, there is Uber in Japan…Locals tell us that although Japan does have Uber, it's not super well-known and it's definitely not the most convenient option when it comes to traveling around the more sprawling places in Japan, namely cities like Kyoto or Tokyo.
In short, I think you will be absolutely fine since your flight and hotels are paid for already. $1000 should be sufficient, but you must be strict with yourself. $50 a day just about creeps overbudget. I think you should set yourself about $30 a day and maybe sometimes jump up to $50/60 if you wanna try something.