Yes, there is a boat that runs between the dock at Disney's Wilderness Lodge and the marina at Fort Wilderness.
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Blue Flag Launch: The blue route consists of two launches transporting guests around Bay Lake between Disney's Wilderness Lodge, Fort Wilderness, and Contemporary Resort. The two launches operate in opposite direction, meeting at the Contemporary.
Wilderness is approximately 13-minutes once underway. Wait time between boats is typically 10-20 minutes. Red Flag Launch: The red route transports guests from the Magic Kingdom to Disney's Wilderness Lodge.
These hotels are on the Magic Kingdom monorail loop – most of them anyway. Disney's Wilderness Lodge and Villas, and Disney's Fort Wilderness Cabins and Campsites are considered Magic Kingdom-area hotels but do not have monorail service. They do, however, have boat access to the park in addition to bus pickups.
Once the boat leaves the Wilderness Lodge, it's roughly a ten-minute ride to the entrance of Magic Kingdom. It's a relaxing ride, and you get some unique views as you travel through narrow channels, past the Contemporary Resort, and under the monorail track on your way across the lake to the theme park.
While it seems as though you should be able to walk to the other Magic Kingdom resort hotels and perhaps even the Magic Kingdom itself, you can't. Transportation from the Wilderness Lodge is available through either the Boat Dock or the Bus Depot.
Most of the time the monorail is faster. Unless you catch the boat just as it is ready to leave. We have stayed here a few times the monorail is the easy way to get there with no delays.
Starting over in Magic Kingdom, Seven Dwarfs Mine Train had the longest average wait time with 66 minutes. Last week the average wait time was 68 minutes, so the time stayed pretty steady since then.
Getting to the Parks from Wilderness LodgeTo get to three of the four theme parks, you'll be relying on Disney's bus transportation: Epcot — 10 - 15 minutes by bus. Hollywood Studios — 10-15 minutes by bus. Animal Kingdom — 15-20 minutes by bus.
Water taxi service is available from several Walt Disney World Resort hotels, such as Disney's Port Orleans Resort – French Quarter and Riverside, as well as Disney's Saratoga Springs Resort & Spa and Disney's Old Key West Resort. These water taxis are free for Guest usage to arrive and depart from Disney Springs.